Genomic Data Pipeline

At a glance

Client

IBV-CSIC — Cell Division & Cohesinopathies Unit

Area

Genomics

Scope

Bash, Python, WGS, Suppressor Mutation Analysis

Result

Production genomic pipeline for suppressor mutation analysis of thermosensitive separase-inactivating mutations

What I did

Developed a production NGS analysis pipeline for whole-genome sequencing focused on identifying suppressor mutations of thermosensitive separase-inactivating mutations. Built with Bash and Python for reproducibility and scalability.

Technologies and topics

Related

• Service: Bioinformatics pipeline validation
• Article: Bioinformatics Pipeline Validation: ICC, Cohen's Kappa, and Spearman in Practice